Updates to README, addition of plotting script and sample data
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When you run each code, it will iterate through the set of problem sizes predefined inside benchmark.cpp
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# Building and running the codes on Cori@NERSC
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Please refer to lecture slides for additional information about accessing Cori, building your code there, and running your code there.
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# EOF
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plot_3vars.py
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plot_3vars.py
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"""
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E. Wes Bethel, Copyright (C) 2022
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October 2022
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Description: This code loads a .csv file and creates a 3-variable plot
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Inputs: the named file "sample_data_3vars.csv"
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Outputs: displays a chart with matplotlib
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Dependencies: matplotlib, pandas modules
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Assumptions: developed and tested using Python version 3.8.8 on macOS 11.6
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"""
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import pandas as pd
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import matplotlib.pyplot as plt
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fname = "sample_data_3vars.csv"
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df = pd.read_csv(fname, comment="#")
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print(df)
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var_names = list(df.columns)
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print("var names =", var_names)
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# split the df into individual vars
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# assumption: column order - 0=problem size, 1=blas time, 2=basic time
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problem_sizes = df[var_names[0]].values.tolist()
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code1_time = df[var_names[1]].values.tolist()
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code2_time = df[var_names[2]].values.tolist()
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code3_time = df[var_names[3]].values.tolist()
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plt.title("Comparison of 3 Codes")
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xlocs = [i for i in range(len(problem_sizes))]
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plt.xticks(xlocs, problem_sizes)
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plt.plot(code1_time, "r-o")
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plt.plot(code2_time, "b-x")
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plt.plot(code3_time, "g-^")
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#plt.xscale("log")
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#plt.yscale("log")
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plt.xlabel("Problem Sizes")
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plt.ylabel("runtime")
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varNames = [var_names[1], var_names[2], var_names[3]]
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plt.legend(varNames, loc="best")
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plt.grid(axis='both')
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plt.show()
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# EOF
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sample_data_3vars.csv
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sample_data_3vars.csv
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# author: E. Wes Bethel, Oct 2022
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# sample data for use with the plot_3vars.py file
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Problem Size,code 1,code 2,code 3
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64,0.00044,0.00128,0.00759
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128,0.00061,0.00949,0.05974
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256,0.00236,0.0875,0.20877
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512,0.01201,0.1418,0.89089
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1024,0.07743,0.81365,3.04055
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