Updates to README, addition of plotting script and sample data

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Wes Bethel 2022-10-18 07:10:47 -07:00
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When you run each code, it will iterate through the set of problem sizes predefined inside benchmark.cpp
# Building and running the codes on Cori@NERSC
Please refer to lecture slides for additional information about accessing Cori, building your code there, and running your code there.
# EOF

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plot_3vars.py Normal file
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"""
E. Wes Bethel, Copyright (C) 2022
October 2022
Description: This code loads a .csv file and creates a 3-variable plot
Inputs: the named file "sample_data_3vars.csv"
Outputs: displays a chart with matplotlib
Dependencies: matplotlib, pandas modules
Assumptions: developed and tested using Python version 3.8.8 on macOS 11.6
"""
import pandas as pd
import matplotlib.pyplot as plt
fname = "sample_data_3vars.csv"
df = pd.read_csv(fname, comment="#")
print(df)
var_names = list(df.columns)
print("var names =", var_names)
# split the df into individual vars
# assumption: column order - 0=problem size, 1=blas time, 2=basic time
problem_sizes = df[var_names[0]].values.tolist()
code1_time = df[var_names[1]].values.tolist()
code2_time = df[var_names[2]].values.tolist()
code3_time = df[var_names[3]].values.tolist()
plt.title("Comparison of 3 Codes")
xlocs = [i for i in range(len(problem_sizes))]
plt.xticks(xlocs, problem_sizes)
plt.plot(code1_time, "r-o")
plt.plot(code2_time, "b-x")
plt.plot(code3_time, "g-^")
#plt.xscale("log")
#plt.yscale("log")
plt.xlabel("Problem Sizes")
plt.ylabel("runtime")
varNames = [var_names[1], var_names[2], var_names[3]]
plt.legend(varNames, loc="best")
plt.grid(axis='both')
plt.show()
# EOF

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sample_data_3vars.csv Normal file
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# author: E. Wes Bethel, Oct 2022
# sample data for use with the plot_3vars.py file
Problem Size,code 1,code 2,code 3
64,0.00044,0.00128,0.00759
128,0.00061,0.00949,0.05974
256,0.00236,0.0875,0.20877
512,0.01201,0.1418,0.89089
1024,0.07743,0.81365,3.04055
1 # author: E. Wes Bethel, Oct 2022
2 # sample data for use with the plot_3vars.py file
3 Problem Size,code 1,code 2,code 3
4 64,0.00044,0.00128,0.00759
5 128,0.00061,0.00949,0.05974
6 256,0.00236,0.0875,0.20877
7 512,0.01201,0.1418,0.89089
8 1024,0.07743,0.81365,3.04055